Neighbour Joining
En bio-informatique, le neighbour joining (ou neighbor joining) est une méthode d'élaboration d'arbres de données phylogénétiques. La méthode neighbor joining se base sur les mêmes principes que les méthodes d'analyse de groupe (cluster analysis), telles que la méthode de UPGMA (qui se base sur les distances génétiques pour construire un arbre phylogénétique). La seule différence de la méthode de neighbor joining est qu'elle tient compte des différences de vitesse d'évolution entre les différentes branches de l'arbre phylogénétique. Cette méthode fournit un arbre non polarisé (non enraciné).
Utilisée généralement pour les arbres de données basés sur l'ADN ou les séquences de protéines, l'algorithme requiert la connaissance de la distance entre chaque paire de taxons (par. ex. espèces ou séquences) dans l'arbre.

Ceci est un extrait de l'article Neighbour Joining de l'encyclopédie libre Wikipedia. La liste des auteurs est disponible sur Wikipedia.
Sur fr.wikipedia.org, l'article Neighbour Joining a été consulté 275 fois au cours des 30 derniers jours. (date: 04.06.2014)
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Neighbour joining - Wikipédia
En bio-informatique, le neighbor joining est une méthode d'élaboration d'arbres de données phylogénétiques. La méthode neighbor joining se base sur les ...
fr.wikipedia.org/wiki/Neighbour_joining
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Neighbor joining - Wikipedia, the free encyclopedia
In bioinformatics, neighbor joining is a bottom-up clustering method for the creation of phenetic trees (phenograms), created by Naruya Saitou and Masatoshi ...
en.wikipedia.org/wiki/Neighbor_joining
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Le Neighbor-Joining (NJ)
Principe du Neighbor-Joining. • Le terme Neighbor (=voisin) désigne 2 taxa dans l'arbre reliés par un seul nœud dans un arbre non raciné. – 1 et 2 sont voisins.
rna.igmors.u-psud.fr/gautheret/cours/CB-nj.pdf
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Neighbour-joining - Philippe GAMBETTE
Neighbour-joining. L'algorithme de NJ (neighbour-joining [37]), aussi fondé sur la notion de distance, consiste à calculer les longueurs de branches de l'arbre et ...
philippe.gambette.free.fr/SCOL/NotesBioinfo/node38.html
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The neighbor-joining method: a new method for reconstructing ...
A new method called the neighbor-joining method is proposed for reconstructing phylogenetic trees from evolutionary distance data. The principle of this method ...
www.ncbi.nlm.nih.gov/pubmed/3447015
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Neighbor-joining method
8 Aug 1997 ... Neighbor-joining (Saitou and Nei, 1987) is a method that is related to the cluster method but does not require the data to be ultrametric. In other ...
www.icp.ucl.ac.be/~opperd/private/neighbor.html
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The Neighbor-joining Method - Molecular Biology and Evolution
A new method called the neighbor-joining method is proposed for reconstructing ... I. Key words: phylogenetic tree, neighbor-joining method, minimum-evolution ...
mbe.oxfordjournals.org/content/4/4/406.full.pdf
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The neighbor-joining method - Molecular Biology and Evolution
Abstract. A new method called the neighbor-joining method is proposed for reconstructing phylogenetic trees from evolutionary distance data. The principle of ...
mbe.oxfordjournals.org/content/4/4/406
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Neighbour Joining Method (Saitou and Nei, 1987)
Neighbour Joining Method (Saitou and Nei, 1987). Summary. The Neighbour Joining method is a method for re-constructing phylogenetic trees, and computing ...
www.stat.berkeley.edu/users/terry/Classes/s246.2006/Week6/2neighbourJoining.pdf
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Noeuds Lymphatiques; ganglion lymphatique; ganglions lymphatiques ...
Noeuds Lymphatiques; ganglion lymphatique; ganglions lymphatiques; lymphonoeud; lymphonoeuds; noeud lymphatique. Aide pour diagnostic médical. Méthode automatique d ...
www.lookfordiagnosis.com/mesh_info.php?term=Noeuds+Lymphatiques&lang=4
Résultats de la recherche pour "Neighbour Joining"
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Neighbour Joining en science
Phylogénie
NJ(Neighbor-Joining). Cette méthode développée par Saitou et Nei (1987) tente de corriger la méthode UPGMA afin d'autoriser un taux de mutation différent ...
Phylogeny Programs (continued) - University of Washington
Server for alignment and neighbor-joining trees using the ClustalW program. ... The Bioinformatics Centre at the University of Wageningen, Netherlands, makes ...
Phylogeny Programs (continued) - University of Washington
QuickTree: building huge Neighbour-Joining trees of protein sequences. ..... Philipp Schlüter of the Institut für Systematische Botanik of the University of Zürich , ...
[PDF]Université du Québec à Montréal - (DESS) en bio-informatique
(BIF7001) de l'Université du Québec à Montréal. Il présente les ..... Le principe de Neighbor Joining consiste en la recherche séquentielle des voisins en ...
Neighbor-Joining Revealed
6 sept. 2012 ... CNRS : UMR5506 – Université Montpellier II - Sciences et techniques ... criterion – Minimum Evolution – Consistency – Neighbor Joining ...
Neighbour joining - Wikipédia
En bio-informatique, le neighbor joining est une méthode d'élaboration d'arbres de données phylogénétiques. La méthode neighbor joining se base sur les ...
Livres sur le terme Neighbour Joining
Algorithms in Bioinformatics: 8th International Workshop, ...
Algorithms in Bioinformatics: 8th International Workshop, ...
Keith Crandall, Jens Lagergren, 2008
Rapid Neighbour-Joining Martin Simonsen, Thomas Mailund, andChristianN.S. Pedersen Bioinformatics Research Center (BIRC), University of Aarhus, C. F. Møllers All ́e, Building 1110, DK-8000 ̊Arhus C, Denmark {kejseren,mailund ...
Biological Sequence Analysis: Probabilistic Models of ...
Biological Sequence Analysis: Probabilistic Models of ...
Richard Durbin, 1998
Now we know that neighbour-joining correctly reconstructs an additive tree, so it follows that neighbour-joining will also correctly reconstruct any tree, if we use maximum likelihood distances derived from a multiplicative, reversible model, and ...
Biomedical Engineering Systems and Technologies: Third ...
Biomedical Engineering Systems and Technologies: Third ...
Ana Fred, Joaquim Filipe, Hugo Gamboa, 2011
Inference of Large Phylogenies Using Neighbour-Joining Martin Simonsen, Thomas Mailund, and Christian N.S. Pedersen Bioinformatics Research Centre ( BIRC), Aarhus University C. F. Møllers All ́e 8, DK-8000 ̊Arhus C, Denmark {zxr  ...
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
Richard Durbin, Sean R. Eddy, Anders Krogh et Graeme Mitchison, 1998
Probabilistic models are becoming increasingly important in analysing the huge amount of data being produced by large-scale DNA-sequencing efforts such as the Human Genome Project. For example, hidden Markov models are used for analysing biological sequences, linguistic-grammar-based probabilistic models for identifying RNA secondary structure, and...
The Evolutionary Biology of the Bivalvia
The Evolutionary Biology of the Bivalvia
Elizabeth Harper, John David Taylor, J. Alistair Crame, 2000
Maximum parsimony, neighbour-joining and bootstrap analyses were performed using PAUP 3.1.1 (Swofford 1993) and PAUP*4.0 (Swofford 1999). Decay indices (also called Bremer indices) were calculated using TreeRot (Sorenson 1999).
Introduction to Phase Transitions and Critical Phenomena
Introduction to Phase Transitions and Critical Phenomena
H. Eugene Stanley, 1988
This is a paperback edition of a distinguished book, originally published by Clarendon Press in 1971. It was then the first text on critical phenomena, a field that has enjoyed great activity for the past twenty years and that still continues to attract much attention. The book is at the level at which a graduate student who has studied condensed m...
Molecular Fungal Biology
Molecular Fungal Biology
Richard P. Oliver, Michael Schweizer, 1999
Neighbour-joining The neighbour-joining algorithm (Saitou and Nei, 1987), like UPGMA and Fitch-Margoliash algorithms, begins with a distance matrix. Neighbour-joining works by clustering taxa to minimize the total distance in the tree. First ...
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Neighbour Joining
Neighbor Joining Plus – algorithm for phylogenetic tree reconstruction with proper nodes assignment | Haldane's Sieve
Neighbor Joining Plus - algorithm for phylogenetic tree reconstruction with proper nodes assignment Piotr Plonski, Jan P. Radomski (Submitted on 8 Oct 2013) Most of major algorithms for phylogenetic tree reconstruction assume that sequences in the analyzed set either do not have any offspring, or that parent sequences can maximally mutate into just two descendants.…
haldanessieve.org/2013/10/09/neighbor-joining-plus-algorithm-for-phylogenetic-tree-reconstruction-with-proper-nodes-assignment/
Neighbour joining | Peter's Website
www.petercollingridge.co.uk/chinese-analysis/neighbour-joining
Fig Phylogenetic tree constructed by the Neighbour Joining Method | Protease Inhibitors Guide
Posted on August 29, 2013 by admin.
www.peptideslab.com/fig-phylogenetic-tree-constructed-by-the-neighbour-joining-method.html
Boops boops: Negative branch lengths in neighbour-joining analyses
A recent analysis of some fish COI data revealed these really odd branch tips going backwards on the tree. I'd never heard of this before and neither had most people I asked.
boopsboops.blogspot.com/2010/10/negative-branch-lengths-in-neighbour.html
RapidNJ 2.2.1 - Fast Canonical Neighbor-joining Tree Construction
www.mybiosoftware.com/phylogenetic-analysis/3689
Mailund on the Internet » Blog Archive » You know, people do use neighbour joining!
Over the last couple of years, I have done a little work on phylogeny inference, including a few papers on Neighbour Joining. One thing that consistently happens when you submit a paper on this -- and I bring it up because I have just gotten back reviewer reports on such a paper -- is that at least one reviewer will tell you that Neighbour Joining is not interesting and one should focus on maximum likelihood / Bayesian trees instead.
www.mailund.dk/index.php/2008/03/27/you-know-people-do-use-neighbour-joining/
Dienekes’ Anthropology Blog: Admixed populations in neighbor-joining trees
Pac Symp Biocomput. 2013:273-84.
dienekes.blogspot.com/2013/02/admixed-populations-in-neighbor-joining.html
Neighbour-Joining(邻接法)构建进化树 _Felix_新浪博客
Neighbour-Joining(邻接法)构建进化树 _Felix_新浪博客,Felix,
blog.sina.com.cn/s/blog_5e9e98210101ni7t.html
R in Ecology and Evolution: Neighbor Joining Tree with Ape
Today I used R to create a neighbor joining phenogram, using the ape library. The phenogram will be used to visualize a species genetic differences between six different locations in Costa Rica.
r-eco-evo.blogspot.com/2007/09/neighbor-joining-tree-with-ape.html
Python for Bioinformatics: My version of neighbor-joining in Python
I finished debugging my version of the neighbor-joining method in Python. The zipped project files are here.
telliott99.blogspot.com/2010/11/my-version-of-neighbor-joining-in.html
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